Python language

• Scenic+ (GRNs build)

Integration of single-cell omics (RNA + ATAC)

• scRNA-seq preprocessing (Scanpy)
• scATAC-seq preprocessing (pycisTopic)
• Motif enrichment (pycistarget)
• eGRNs with SCENIC+
• Downstream analysis

Machine learning models

• Linear Regression
• Random Forest
• Support Vector Machine

Deep learning models

• Neural Networks
• Variational Autoencoders